BCLUST is a small, simple, command prompt based tool specially designed to help you asses reliability of geneclusters from expression data by using consensus tree and bootstrap resampling method.
Because of the rapid development of microarray technologies, many of statistical procedures, most notably a variety of clustering algorithms, have been successfully applied to analyze such kind of data.
Price: USD $0.00;
IGBM (Identification of gene blocks in microorganisms) implements a BLAST-like method to infer conserved geneclusters among closely related prokaryotes, and provides a graphical user interface to navigate the identified clusters and their annotated info
Price: USD $0.00;
File Size: 5237 KB;
Platform: Windows, Mac, Linux , Solaris
LeMoNe 2.5.1 Gene expression data analysis made easy. LeMoNe is for Learning Module Networks from gene expression data.The purpose of the LeMoNe program package is to create a module network from expression data. The end result is a set of geneclusters (co-expressed genes), and their associated regulators.Please Note: this software is free for academic use only.Requirements:* Java
Gene Visualizer New Gene Visualizer is a small app designed to display an organism's genes visually. The program takes two sets of genes as input. One is a list of an organism's predicted genes, and the other is a list of an organism's known genes. It can be useful to compare how the two lists of genes match up, which is where Gene Visualizer comes in handy.
The organism's genome is laid out linearly from left to right. Genes are shown near the 6 horizontal...
Gene Inspector 1.6.8 Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence, and the user can design custom "style sheets" which specify exactly how the output will look. This information can then be saved as a new...
Gene Construction Kit 3.0.1
The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid Mapping Software" by the Biotechnology Software and Internet Journal for four straight years. Textco BioSoftware - Gene Construction Kit...
Gene Machine: The Lac Operon 1.03 Gene Machine: The Lac Operon create gene networks. Build a gene network! The lac operon is a set of genes which are responsible for the metabolism of lactose in some bacterial cells. Explore the effects of mutations within the lac operon by adding or removing genes from the DNA.Sample Learning Goals1. Predict the effects on lactose metabolism when the various genes and DNA control elements are mutated (added or removed).2. Predict the effects...
GNLab (Gene Network virtual Laboratory) 1.0
Computational Pipeline for Large-Scale Gene Network Analysis. GNLab (Gene Network virtual Laboratory) is a novel bioinformatics tool for the large-scale analysis of gene regulatory networks (GRNs). This C++ command-line tool supports the analysis of both the static structure and dynamic behaviour of a GRN. GNLab is developed to support the design and implementation of large-scale repeatable computational experimentations on GRNs.GNLab consists...
Gene Explorer 1.3
Simulate gene expression fast and easy. Gene Explorer is an interactive simulation of gene expression that allows the user to:1. Explore a sample gene:* Explore the correspondence between DNA, pre-mRNA, mature mRNA, and protein* Map the functional elements of a gene.2. Create mutations in a gene and explore their effects.3. Design a gene of their own and see how it is expressed.The figure above shows the Gene Explorer display:1. The DNA...
PaGE (Patterns from Gene Expression) 5.0.1
PaGE (Patterns from Gene Expression) is free downloadable program for microarray analisys. PaGE can be used to produce sets of differentially expressed genes with confidence measures attached. These lists are generated the False Discovery Rate method of controlling the false positives.But PaGE is more than a differential expression analysis tool. PaGE is a software to attach descriptive , dependable, and easily interpretable expression...
Reliability of Difference Scores 1.0 Reliability of difference scores calculator. Reliability of Difference Scores help you calculate the reliability of difference scores, given the reliability of two tests and the correlation between those two tests.A difference score is obtained by subtracting one test score from another test score. For example, a students IQ test score and Reading test score. This might be interpreted as the difference between capability and achievement.
EJS Shapleys Globular Clusters Model Model
Illustrates the distribution of globular clusters from the Harlow Shapley model. This simulation shows the distribution of globular clusters around the plane of the Milky Way as determined by Harlow Shapley in 1918. The galactic longitudes, latitudes, and distances to the clusters are taken from Shapley's 1918 paper entitled "Studies Based on the Colors and Magnitudes in Stellar Clusters, Seventh Paper: The Distances, Distribution in...
Conrad CRF Engine & Gene Caller rc
Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.
Disease Gene Profiler 1.0.2
Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
Easy WS-Reliability 1.0
Provides a portable C++ API and implementation of WS-Reliability. Provides C++ message element classes and implements SOAP messaging using EasySoap. Uses Boost, expat, and optionally gSoap.Soon: Finite state machine protocol implementation.